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I've set a board to moderate threads before they appear.

I don't want all mods to see them under Mod CP though. I only want certain groups.

How?

I suppose you can make your mod group, make a copy of it then not allow the one copy to have access to the ModCP, but have other permissions as needed, and the main mod group to see the ModCP? Not entirely sure on what you are asking though, just what I got out of it.